Prediction of coding exons

• SorFind

  • Detection of “spliceable” ORFs
  • Hutchinson, NAR, 20(13), 3453-3462.

• BCM GeneFinder

  • FEXD, FEXN, FEXA, FEXY, FEXH, HEXON
  • LDA
  • Solovyev et al. (1994), NAR, 22(24), 5156-5163.
  • http://genomic.sanger.ac.uk/gf/gf.shtml

• GRAIL II

  • Exon candidates, heuristic integration, learning with neural network
  • Uberbacher et al., Genet. Eng., 16, 241-253.
  • http://compbio.ornl.gov/

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