Promoter recognition

• PromoterScan

  • Identify potential promoter regions
  • Based on databases of known TF binding sites
    • TFD (Gosh (1991), TIBS, 16, 445-447)
    • TRANSFAC (Heinemeyer et al. (1999), NAR, 27, 318-322)
  • Prestridge (1995), JMB, 249, 923-932
  • http://bimas.dcrt.nih.gov/molbio/proscan/

• MatInd and MatInspector

  • Finding consensus matches to known TF binding sites
  • Based on TRANSFAC
    • Heinemeyer et al. (1999), NAR, 27, 318-322
  • Quandt et al. (1995), NAR, 23, 4878-4884.
  • http://transfac.gbf.de/TRANSFAC/

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