Promoter recognition (cont.)

• TSSG/TSSW

  • LDA based combination of several features (TATA-box, Inr signal, upstream regions)
  • Solovyev et al. (1997), ISMB, 5, 294-302.
  • http://genomic.sanger.ac.uk/gf/gf.shtml

• Transcription Element Search Software

  • Identify TF binding sites
  • Based on TRANSFAC
  • http://agave.humgen.upenn.edu/tess/index.html

Previous slide

Next slide

Back to first slide

View graphic version